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  A B C D E F G H I
1 Table S3: TaqMan Copy Number Variation assays for the assessment of copy number aberrations
2 Assay ID Cytoband Gene Symbol Gene Name Assay gene location Assay Location
(GRCh38)
DGV Variation ID Amplicon Length Transcript Accession
3 Hs00977539_cn 12q21.33a DUSP6 dual specificity phosphatase 6 Overlaps Intron 1 - Exon 1 Chr.12:89351652
  109 NM_001946.2, NM_022652.2
4 Hs01426560_cn 7p11.2c EGFR epidermal growth factor receptor Within Exon 2 Chr.7:55142320
dgv6355n100;nsv1015816;dgv6356n100;dgv6357n100;
nsv1030676;esv2734425
94 NM_005228.3, NM_201282.1, NM_201283.1, NM_201284.1
5 Hs02822119_cn 7p11.2c EGFR epidermal growth factor receptor Within Exon 10 Chr.7:55156796
esv2734425 75 NM_005228.3, NM_201282.1, NM_201283.1, NM_201284.1
6 Hs01839367_cn 17q12c ERBB2 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 Within Exon 13 Chr.17:39712371
nsv574993;dgv40n68;nsv1056234 98 NM_001005862.1, NM_004448.2
7 Hs00709630_cn 17q12c ERBB2 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 Within Exon 21 Chr.17:39723405
nsv574993;dgv40n68;nsv2048;nsv1056234 101 NM_001005862.1, NM_004448.2
8 Hs02633538_cn 7q31.2b MET met proto-oncogene Within Exon 8 Chr.7:116757692
  80 NM_000245.2, NM_001127500.1
9 Hs05005398_cn 7q31.2b MET met proto-oncogene Within Intron 9 Chr.7:116758782
  107 NM_000245.2, NM_001127500.1
10 Hs05895151_cn 3q26.32c PIK3CA phosphatidylinositol-4;5-bisphosphate 3-kinase; catalytic subunit alpha Overlaps Intron 10 - Exon 11 Chr.3:179219152
esv3893827;nsv979905;nsv1005062;nsv1161007 90 NM_006218.2
11 Hs02085535_cn 3q26.32c PIK3CA phosphatidylinositol-4;5-bisphosphate 3-kinase; catalytic subunit alpha Overlaps Intron 20 - Exon 21 Chr.3:179234101
esv3893827;dgv4999n100 93 NM_006218.2
12 Hs01056328_cn 5q13.1c PIK3R1 phosphoinositide-3-kinase; regulatory subunit 1 (alpha) Overlaps Exon 5 - Intron 5 Chr.5:68279695
nsv598412;nsv950077;nsv830331 108 NM_181523.2
13 Hs01286979_cn 5q13.1c PIK3R1 phosphoinositide-3-kinase; regulatory subunit 1 (alpha) Overlaps Intron 18 - Exon 19 Chr.5:68297416
nsv598412;nsv830331 98 NM_001242466.1, NM_181504.3, NM_181523.2, NM_181524.1
14 Hs00781189_cn 17q24.2c PRKAR1A protein kinase; cAMP-dependent; regulatory; type I; alpha Overlaps Exon 2 - Intron 2 Chr.17:68512604
nsv833523 104 NM_002734.3, NM_212471.1, NM_212472.1
15 Hs00188266_cn 17q24.2c PRKAR1A protein kinase; cAMP-dependent; regulatory; type I; alpha Overlaps Intron 11 - Exon 12 Chr.17:68530297
nsv833524 109 NM_002734.3, NM_212471.1, NM_212472.1
16 Hs01352369_cn 17q21.2b STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) Overlaps Intron 20 - Exon 21 Chr.17:42322471
nsv833449;nsv575051;nsv1056904 98 NM_003150.3, NM_139276.2, NM_213662.1
17 Hs01430798_cn 17q21.2b STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) Overlaps Intron 4 - Exon 4 Chr.17:42345586
nsv833449;nsv575051;nsv1056904 102 NM_003150.3, NM_139276.2, NM_213662.1